Download MetaGene

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Download MetaGene (version for ia32 Linux)

Download MetaGene (version for Mac OS X)

Manual

usage:

metagene [multi-fasta]

output format:

# [sequence name]
# gc = [gc%]
# model: [selected model (bacteria/archaea)]
[start pos.] [end pos.] [strand] [frame*] [score] [complete/partial]
. . .
. . .
. . .

explanations of output column:

*The value of [frame] (0/1/2) indicates the number of surplus (untranslated) nucleotides at the 5'-end of the predicted ORF.
*The value of [score] indicates the estimated score of predicted gene. All predicted genes are more than 0.
*The value of [complete/partial] indicates that the predicted gene structure is whether complete (contains both of start and stop codons) or partial (lacks start or stop or both of them).